Homepage of Dr. Honglei Liu @ Capital Medical University

Enhancing Pulmonary Disease Prediction Using Large Language Models With Feature Summarization and Hybrid Retrieval-Augmented Generation: Multicenter Methodological Study Based on Radiology Report

Ronghao Li#, Shuai Mao#, Congmin Zhu, Yingliang Yang, Chunting Tan, Li Li, Xiangdong Mu, Honglei Liu*, Yuqing Yang*.

Journal of Medical Internet Research, 2025;27:e72638. doi: 10.2196/72638

Interpretable artificial intelligence model for predicting heart failure severity after acute myocardial infarction

Chenglong Guo#, Binyu Gao#, Xuexue Han, Tianxing Zhang, Tianqi Tao*, Jinggang Xia*, Honglei Liu*.

BMC Cardiovascular Disorders, 2025;25:362.

Leveraging Large Language Models to Enhance Medical Text Representation for Lung Diagnosis Prediction via Knowledge Infusion

Binyu Gao, Jun Huang, Qiuying Yang, Honglei Liu^*.

Tsinghua Science and Technology, 2024.

Exploring the potential role of oxidative stress-related genes in colorectal cancer recurrence and establishing a recurrence assessment system based on single-cell and bulk RNA-seq analysis

Xin Gao, Jin Li, Qingyu Wang, ZiHui Wang, SiJia Li, LvTao Zeng, Honglei Liu, Jianping Cai^*.

Clinical and Translational Medicine, 2024; 14: e1577.

The real-time and patient-specific prediction for duration and recovery profile of cisatracurium based on deep learning models

Kan Wang, Binyu Gao, Heqi Liu, Hui Chen^*, Honglei Liu^*.

Frontiers in Pharmacology, 2022; 12.

Exploring the Relationship between Anxiety, Depression, and Sleep Disturbance among HIV Patients in China from a Network Perspective

Ni Wang, Muyu Wang, Xin Xin, Tong Zhang, Hao Wu, Xiaojie Huang^*, Honglei Liu^*.

Frontiers in Psychiatry, 2021; 12: 1814.

Use of BERT (Bidirectional Encoder Representations from Transformers)-Based Deep Learning Method for Extracting Evidences in Chinese Radiology Reports: Development of a Computer-Aided Liver Cancer Diagnosis Framework

Honglei Liu, Zhiqiang Zhang, Yan Xu, Ni Wang, Yanqun Huang, Zhanghan Yang, Rui Jiang, Hui Chen^*.

Journal of Medical Internet Research, 2021; 23(1): e19689.

A Natural Language Processing Pipeline of Chinese Free-text Radiology Reports for Liver Cancer Diagnosis

Honglei Liu, Yan Xu, Zhiqiang Zhang, Ni Wang, Yanqun Huang, Yanjun Hu, Zhanghan Yang, Rui Jiang^*, Hui Chen^*.

IEEE ACCESS, 2020; 8(2020): 159110-9.

Hospitalization Trends in Adult Patients with COPD and Other Respiratory Diseases in Northeast China from 2005 to 2015

Honglei Liu^#, Ni Wang^#, Wei Chen, Wenyan Liu, Shiping Wang, Jianbo Lei^*, Hui Chen^*.

Biomed Research International, 2018; 2018: 1-7.

Using CRISPR-ERA Webserver for sgRNA Design

Honglei Liu, Xiaowo Wang, Lei Qi.

BIO-PROTOCOL, 2017; 7(17).

CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation

Honglei Liu, Zheng Wei, Antonia Dominguez, Yanda Li, Xiaowo Wang^*, Lei Qi^*.

Bioinformatics, 2015; 31(22): 3676-3678.

OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites

Honglei Liu, Yanda Li, Xiaowo Wang.

Quantitative Biology, 2014; 2(3): 100-109.